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HPV Target gene Detail Information

> SLC7A13 Gene Search Result


Gene Information
Gene Name SLC7A13
Gene ID 157724
Gene Full Name solute carrier family 7 member 13
Gene Alias AGT1; XAT2; AGT-1
Transcripts ENSG00000164893
Virus HPV
Gene Type protein coding
HPA Location Info
Membrane Info Predicted membrane proteins
HPA Protein Class Info Predicted membrane proteins, Transporters
Uniport_ID Q8TCU3
HGNC ID HGNC:23092
VEGA ID OTTHUMG00000163663
OMIM ID 617256
String ID 9606.ENSP00000297524
PharmGKB ID PA134980828
Target gene [SLC7A13] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5201140 chr8 0 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE140662 (GEO) Condyloma Acuminatum 8 Condyloma acuminata (HPV+)(5), Skin(3)
GSE55546 (GEO) Oropharyngeal squamous cell carcinoma 16 Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO) Oropharyngeal squamous cell carcinoma 23 Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO) Oropharyngeal squamous cell carcinoma 36 Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)
GSE51993 (GEO) Cervical intraepithelial neoplasia 24 Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)
HNSC (TCGA) Head and Neck squamous cell carcinoma 566 Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE140662

HeatMap of cell type fractions in all samples Lollipop of SLC7A13 expression and immune infiltrating cell level correlation result in HPV+ samples
SLC7A13 expression: Low -> High

> Dataset: GSE55546

HeatMap of cell type fractions in all samples Lollipop of SLC7A13 expression and immune infiltrating cell level correlation result in HPV+ samples
SLC7A13 expression: Low -> High

> Dataset: GSE55544

HeatMap of cell type fractions in all samples Lollipop of SLC7A13 expression and immune infiltrating cell level correlation result in HPV+ samples
SLC7A13 expression: Low -> High

> Dataset: GSE55542

HeatMap of cell type fractions in all samples Lollipop of SLC7A13 expression and immune infiltrating cell level correlation result in HPV+ samples
SLC7A13 expression: Low -> High

> Dataset: GSE51993

HeatMap of cell type fractions in all samples Lollipop of SLC7A13 expression and immune infiltrating cell level correlation result in HPV+ samples
SLC7A13 expression: Low -> High

> Dataset: HNSC

HeatMap of cell type fractions in all samples Lollipop of SLC7A13 expression and immune infiltrating cell level correlation result in HPV+ samples
SLC7A13 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).