Home
Virus
Gene
Disease
Dataset
Download
Help
 
HPV Target gene Detail Information

> SLC6A10P Gene Search Result


Gene Information
Gene Name SLC6A10P
Gene ID 386757
Gene Full Name solute carrier family 6 member 10, pseudogene
Gene Alias CT2; CT-2; SLC6A10; SLC6A10pA
Transcripts ENSG00000214617
Virus HPV
Gene Type pseudo
HPA Location Info
HGNC ID HGNC:11043
VEGA ID OTTHUMG00000132481
PharmGKB ID PA35906
Target gene [SLC6A10P] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5404225 chr16 0 View
5404727 chr16 1 1 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE140662 (GEO) Condyloma Acuminatum 8 Condyloma acuminata (HPV+)(5), Skin(3)
GSE65858 (GEO) Head and neck squamous cell carcinoma 270 Head and neck squamous cell carcinoma (EBV+)(73), Head and neck squamous cell carcinoma (EBV-)(197)
GSE40774 (GEO) Head and neck squamous cell carcinoma 134 Head and neck Squamous cell carcinomas GLOTTIC LARYNX (EBV-)(2), Head and neck Squamous cell carcinomas HYPOPHARYNX (EBV-)(9), Head and neck Squamous cell carcinomas ORAL CAVITY (EBV-)(23), Head and neck Squamous cell carcinomas ORAL CAVITY (EBV+)(2), Head and neck Squamous cell carcinomas OROPHARYNX (EBV-)(22), Head and neck Squamous cell carcinomas OROPHARYNX (EBV+)(54), Head and neck Squamous cell carcinomas OTHER (EBV+)(1), Head and neck Squamous cell carcinomas SUBGLOTTIC LARYNX (EBV-)(1), Head and neck Squamous cell carcinomas SUPRAGLOTTIC (EBV-)(19), Squamous cell carcinomas SUPRAGLOTTIC (EBV+)(1)
GSE55546 (GEO) Oropharyngeal squamous cell carcinoma 16 Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO) Oropharyngeal squamous cell carcinoma 23 Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO) Oropharyngeal squamous cell carcinoma 36 Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)
GSE138080 (GEO) Cervical intraepithelial neoplasia 25 Normal (10), Cervical intraepithelial neoplasia (HPV+)(15)
GSE51993 (GEO) Cervical intraepithelial neoplasia 24 Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)
HNSC (TCGA) Head and Neck squamous cell carcinoma 566 Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE140662

HeatMap of cell type fractions in all samples Lollipop of SLC6A10P expression and immune infiltrating cell level correlation result in HPV+ samples
SLC6A10P expression: Low -> High

> Dataset: GSE65858

HeatMap of cell type fractions in all samples Lollipop of SLC6A10P expression and immune infiltrating cell level correlation result in HPV+ samples
SLC6A10P expression: Low -> High

> Dataset: GSE40774

HeatMap of cell type fractions in all samples Lollipop of SLC6A10P expression and immune infiltrating cell level correlation result in HPV+ samples
SLC6A10P expression: Low -> High

> Dataset: GSE55546

HeatMap of cell type fractions in all samples Lollipop of SLC6A10P expression and immune infiltrating cell level correlation result in HPV+ samples
SLC6A10P expression: Low -> High

> Dataset: GSE55544

HeatMap of cell type fractions in all samples Lollipop of SLC6A10P expression and immune infiltrating cell level correlation result in HPV+ samples
SLC6A10P expression: Low -> High

> Dataset: GSE55542

HeatMap of cell type fractions in all samples Lollipop of SLC6A10P expression and immune infiltrating cell level correlation result in HPV+ samples
SLC6A10P expression: Low -> High

> Dataset: GSE138080

HeatMap of cell type fractions in all samples Lollipop of SLC6A10P expression and immune infiltrating cell level correlation result in HPV+ samples
SLC6A10P expression: Low -> High

> Dataset: GSE51993

HeatMap of cell type fractions in all samples Lollipop of SLC6A10P expression and immune infiltrating cell level correlation result in HPV+ samples
SLC6A10P expression: Low -> High

> Dataset: HNSC

HeatMap of cell type fractions in all samples Lollipop of SLC6A10P expression and immune infiltrating cell level correlation result in HPV+ samples
SLC6A10P expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).