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HBV Target gene Detail Information

> SLC5A6 Gene Search Result


Gene Information
Gene Name SLC5A6
Gene ID 8884
Gene Full Name solute carrier family 5 member 6
Gene Alias SMVT
Transcripts ENSG00000138074
Virus HBV
Gene Type protein coding
HPA Location Info Plasma membrane;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins, Transporters
Uniport_ID Q9Y289
HGNC ID HGNC:11041
VEGA ID OTTHUMG00000097075
OMIM ID 604024
String ID 9606.ENSP00000310208
Drugbank ID BE0000094
PharmGKB ID PA379
Target gene [SLC5A6] related to VISs
DVIDChromosomeHMTFBSCASum of Overlapped RecordsDetail
1005738 chr2 36 13 49 View
Showing 1 to 1 of 1 entries
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Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of SLC5A6 expression and immune infiltrating cell level correlation result in HBV+ samples
SLC5A6 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).