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HPV Target gene Detail Information

> SLC13A4 Gene Search Result


Gene Information
Gene Name SLC13A4
Gene ID 26266
Gene Full Name solute carrier family 13 member 4
Gene Alias NAS2; SUT1; SUT-1
Transcripts ENSG00000164707
Virus HPV
Gene Type protein coding
HPA Location Info
Membrane Info Predicted membrane proteins
HPA Protein Class Info Predicted membrane proteins, Transporters
Uniport_ID Q9UKG4
HGNC ID HGNC:15827
VEGA ID OTTHUMG00000155539
OMIM ID 604309
String ID 9606.ENSP00000297282
PharmGKB ID PA38045
Target gene [SLC13A4] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5402113 chr7 11 4 15 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE65858 (GEO) Head and neck squamous cell carcinoma 270 Head and neck squamous cell carcinoma (EBV+)(73), Head and neck squamous cell carcinoma (EBV-)(197)
GSE138080 (GEO) Cervical intraepithelial neoplasia 25 Normal (10), Cervical intraepithelial neoplasia (HPV+)(15)
HNSC (TCGA) Head and Neck squamous cell carcinoma 566 Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE65858

HeatMap of cell type fractions in all samples Lollipop of SLC13A4 expression and immune infiltrating cell level correlation result in HPV+ samples
SLC13A4 expression: Low -> High

> Dataset: GSE138080

HeatMap of cell type fractions in all samples Lollipop of SLC13A4 expression and immune infiltrating cell level correlation result in HPV+ samples
SLC13A4 expression: Low -> High

> Dataset: HNSC

HeatMap of cell type fractions in all samples Lollipop of SLC13A4 expression and immune infiltrating cell level correlation result in HPV+ samples
SLC13A4 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).