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HPV Target gene Detail Information

> SHOX Gene Search Result


Gene Information
Gene Name SHOX
Gene ID 6473
Gene Full Name short stature homeobox
Gene Alias SS; GCFX; PHOG; SHOXY
Transcripts ENSG00000185960
Virus HPV
Gene Type protein coding
HPA Location Info Nucleoplasm;Vesicles;
HPA Protein Class Info Disease related genes, Predicted intracellular proteins, Transcription factors
Uniport_ID O15266
HGNC ID HGNC:10853
VEGA ID OTTHUMG00000021053
OMIM ID 312865
String ID 9606.ENSP00000370990
PharmGKB ID PA134978644
Target gene [SHOX] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5201962 chrX 14 5 19 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE140662 (GEO) Condyloma Acuminatum 8 Condyloma acuminata (HPV+)(5), Skin(3)
GSE55546 (GEO) Oropharyngeal squamous cell carcinoma 16 Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO) Oropharyngeal squamous cell carcinoma 23 Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO) Oropharyngeal squamous cell carcinoma 36 Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)
GSE138080 (GEO) Cervical intraepithelial neoplasia 25 Normal (10), Cervical intraepithelial neoplasia (HPV+)(15)
GSE51993 (GEO) Cervical intraepithelial neoplasia 24 Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)
HNSC (TCGA) Head and Neck squamous cell carcinoma 566 Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE140662

HeatMap of cell type fractions in all samples Lollipop of SHOX expression and immune infiltrating cell level correlation result in HPV+ samples
SHOX expression: Low -> High

> Dataset: GSE55546

HeatMap of cell type fractions in all samples Lollipop of SHOX expression and immune infiltrating cell level correlation result in HPV+ samples
SHOX expression: Low -> High

> Dataset: GSE55544

HeatMap of cell type fractions in all samples Lollipop of SHOX expression and immune infiltrating cell level correlation result in HPV+ samples
SHOX expression: Low -> High

> Dataset: GSE55542

HeatMap of cell type fractions in all samples Lollipop of SHOX expression and immune infiltrating cell level correlation result in HPV+ samples
SHOX expression: Low -> High

> Dataset: GSE138080

HeatMap of cell type fractions in all samples Lollipop of SHOX expression and immune infiltrating cell level correlation result in HPV+ samples
SHOX expression: Low -> High

> Dataset: GSE51993

HeatMap of cell type fractions in all samples Lollipop of SHOX expression and immune infiltrating cell level correlation result in HPV+ samples
SHOX expression: Low -> High

> Dataset: HNSC

HeatMap of cell type fractions in all samples Lollipop of SHOX expression and immune infiltrating cell level correlation result in HPV+ samples
SHOX expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).