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HBV Target gene Detail Information

> SH3RF3 Gene Search Result


Gene Information
Gene Name SH3RF3
Gene ID 344558
Gene Full Name SH3 domain containing ring finger 3
Gene Alias POSH2; SH3MD4
Transcripts ENSG00000172985
Virus HBV
Gene Type protein coding
HPA Location Info Nucleoplasm;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q8TEJ3
HGNC ID HGNC:24699
VEGA ID OTTHUMG00000153439
OMIM ID 618933
String ID 9606.ENSP00000309186
PharmGKB ID PA162403291
Target gene [SH3RF3] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1001206 chr2 546 364 11 921 View
1001207 chr2 546 363 11 920 View
1001240 chr2 493 363 11 867 View
1001248 chr2 490 356 11 857 View
1001258 chr2 527 306 11 844 View
1001273 chr2 518 302 11 831 View
1001408 chr2 464 255 9 728 View
1001424 chr2 433 271 9 713 View
1001520 chr2 419 226 2 647 View
1001546 chr2 408 220 2 630 View
1001691 chr2 341 181 522 View
1001713 chr2 341 177 518 View
1001777 chr2 314 171 2 487 View
1002109 chr2 225 117 342 View
1002400 chr2 203 76 1 280 View
1002401 chr2 203 76 1 280 View
1002733 chr2 153 60 1 214 View
1003605 chr2 95 27 122 View
1003620 chr2 94 27 121 View
1003738 chr2 89 24 113 View
1003850 chr2 84 21 105 View
1004168 chr2 72 18 90 View
1004756 chr2 62 8 70 View
1005044 chr2 59 4 63 View
1005045 chr2 59 4 63 View
1005115 chr2 58 3 61 View
1005396 chr2 53 2 55 View
1005773 chr2 44 4 48 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of SH3RF3 expression and immune infiltrating cell level correlation result in HBV+ samples
SH3RF3 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).