HBV Target gene Detail Information

> SGCD Gene Search Result

Gene Information

Gene Name	SGCD
Gene ID	6444
Gene Full Name	sarcoglycan delta
Gene Alias	SGD; DAGD; 35DAG; CMD1L; SGCDP; LGMDR6; SG-delta
Transcripts	ENSG00000170624
Virus	HBV
Gene Type	protein coding
HPA Location Info
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Disease related genes, Predicted membrane proteins
Uniport_ID	Q92629
HGNC ID	HGNC:10807
VEGA ID	OTTHUMG00000163445
OMIM ID	601411
String ID	9606.ENSP00000338343
PharmGKB ID	PA35718

Target gene [SGCD] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1000890	chr5	536	195	572	1303	View
1001693	chr5	428	27	66	521	View
1001718	chr5	419	27	70	516	View
1001739	chr5	406	28	73	507	View
1007437	chr5	7	1	19	27	View
1008336	chr5	5	1	15	21	View
1011899	chr5	8			8	View
1014610	chr5	3			3	View
1014945	chr5	3			3	View
1018631	chr5				0	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
LIHC (TCGA)	Liver hepatocellular carcinoma	424	Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC
HeatMap of cell type fractions in all samples	Lollipop of SGCD expression and immune infiltrating cell level correlation result in HBV+ samples
SGCD expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).