HBV Target gene Detail Information

> SGCD Gene Search Result


Gene Information
Gene Name SGCD
Gene ID 6444
Gene Full Name sarcoglycan delta
Gene Alias SGD; DAGD; 35DAG; CMD1L; SGCDP; LGMDR6; SG-delta
Transcripts ENSG00000170624
Virus HBV
Gene Type protein coding
HPA Location Info
Membrane Info Predicted membrane proteins
HPA Protein Class Info Disease related genes, Predicted membrane proteins
Uniport_ID Q92629
HGNC ID HGNC:10807
VEGA ID OTTHUMG00000163445
OMIM ID 601411
String ID 9606.ENSP00000338343
PharmGKB ID PA35718
Target gene [SGCD] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1000890 chr5 536 195 572 1303 View
1001693 chr5 428 27 66 521 View
1001718 chr5 419 27 70 516 View
1001739 chr5 406 28 73 507 View
1007437 chr5 7 1 19 27 View
1008336 chr5 5 1 15 21 View
1011899 chr5 8 8 View
1014610 chr5 3 3 View
1014945 chr5 3 3 View
1018631 chr5 0 View

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).