HIV Target gene Detail Information

> SF3A1 Gene Search Result

Gene Information

Gene Name	SF3A1
Gene ID	10291
Gene Full Name	splicing factor 3a subunit 1
Gene Alias	PRP21; PRPF21; SAP114; SF3A120
Transcripts	ENSG00000099995
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nuclear speckles;Nucleoplasm;
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins
Uniport_ID	Q15459
HGNC ID	HGNC:10765
VEGA ID	OTTHUMG00000151005
OMIM ID	605595
String ID	9606.ENSP00000215793
PharmGKB ID	PA35683

Target gene [SF3A1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4002560	chr22	74	7	8	89	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of SF3A1 expression and immune infiltrating cell level correlation result in HIV+ samples
SF3A1 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of SF3A1 expression and immune infiltrating cell level correlation result in HIV+ samples
SF3A1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).