HBV Target gene Detail Information

> SCHIP1 Gene Search Result

Gene Information

Gene Name	SCHIP1
Gene ID	29970
Gene Full Name	schwannomin interacting protein 1
Gene Alias	SCHIP-1
Transcripts	ENSG00000151967
Virus	HBV
Gene Type	protein coding
HPA Location Info	Cell Junctions;Cytosol;Plasma membrane;Nuclear bodies;Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	P0DPB3
HGNC ID	HGNC:15678
VEGA ID	OTTHUMG00000158934
OMIM ID	619206
String ID	9606.ENSP00000404860
PharmGKB ID	PA34997

Target gene [SCHIP1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1401429	chr3	2	16		18	View
1401430	chr3	12	16	4	32	View
1402604	chr3				0	View
1404814	chr3		5	2	7	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
LIHC (TCGA)	Liver hepatocellular carcinoma	424	Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC
HeatMap of cell type fractions in all samples	Lollipop of SCHIP1 expression and immune infiltrating cell level correlation result in HBV+ samples
SCHIP1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).