HBV Target gene Detail Information

> SCGB1C1 Gene Search Result

Gene Information

Gene Name	SCGB1C1
Gene ID	147199
Gene Full Name	secretoglobin family 1C member 1
Gene Alias	RYD5
Transcripts	ENSG00000188076
Virus	HBV
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Predicted secreted proteins
Uniport_ID	Q8TD33
HGNC ID	HGNC:18394
VEGA ID	OTTHUMG00000165539
OMIM ID	610176
String ID	9606.ENSP00000344545
PharmGKB ID	PA134928324

Target gene [SCGB1C1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1000970	chr11	516	590	206	1312	View
1001484	chr11	404	231	35	670	View
1001493	chr11	401	226	36	663	View
1014770	chr11	3			3	View
1014771	chr11	3			3	View
1402498	chr11	401	227	36	664	View
1402499	chr11	407	278	24	709	View
1402500	chr11	385	219	42	646	View
1403799	chr11	404	268	24	696	View
1403800	chr11	391	217	38	646	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
LIHC (TCGA)	Liver hepatocellular carcinoma	424	Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC
HeatMap of cell type fractions in all samples	Lollipop of SCGB1C1 expression and immune infiltrating cell level correlation result in HBV+ samples
SCGB1C1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).