HIV Target gene Detail Information

> SCAF8 Gene Search Result

Gene Information

Gene Name	SCAF8
Gene ID	22828
Gene Full Name	SR-related CTD associated factor 8
Gene Alias	RBM16
Transcripts	ENSG00000213079
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins
Uniport_ID	Q9UPN6
HGNC ID	HGNC:20959
VEGA ID	OTTHUMG00000015877
OMIM ID	616024
String ID	9606.ENSP00000413098
PharmGKB ID	PA128394587

Target gene [SCAF8] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4004427	chr6	37	6	1	44	View
4008505	chr6	10	2	3	15	View
4011629	chr6	5	1		6	View
4014524	chr6	1	1		2	View
4014525	chr6	2			2	View
4100005	chr6		1		1	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of SCAF8 expression and immune infiltrating cell level correlation result in HIV+ samples
SCAF8 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).