HIV Target gene Detail Information

> SCAF8 Gene Search Result


Gene Information
Gene Name SCAF8
Gene ID 22828
Gene Full Name SR-related CTD associated factor 8
Gene Alias RBM16
Transcripts ENSG00000213079
Virus HIV
Gene Type protein coding
HPA Location Info Nucleoplasm;
HPA Protein Class Info Plasma proteins, Predicted intracellular proteins
Uniport_ID Q9UPN6
HGNC ID HGNC:20959
VEGA ID OTTHUMG00000015877
OMIM ID 616024
String ID 9606.ENSP00000413098
PharmGKB ID PA128394587
Target gene [SCAF8] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4004427 chr6 37 6 1 44 View
4008505 chr6 10 2 3 15 View
4011629 chr6 5 1 6 View
4014524 chr6 1 1 2 View
4014525 chr6 2 2 View
4100005 chr6 1 1 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of SCAF8 expression and immune infiltrating cell level correlation result in HIV+ samples
SCAF8 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).