HIV Target gene Detail Information

> SCAF11 Gene Search Result

Gene Information

Gene Name	SCAF11
Gene ID	9169
Gene Full Name	SR-related CTD associated factor 11
Gene Alias	SIP1; CASP11; SFRS2IP; SRRP129; SRSF2IP
Transcripts	ENSG00000139218
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;Nuclear bodies;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	Q99590
HGNC ID	HGNC:10784
VEGA ID	OTTHUMG00000149930
OMIM ID	603668
String ID	9606.ENSP00000358374
PharmGKB ID	PA35700

Target gene [SCAF11] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4002245	chr12	101	2		103	View
4015243	chr12	1			1	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of SCAF11 expression and immune infiltrating cell level correlation result in HIV+ samples
SCAF11 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).