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HBV Target gene Detail Information

> SAMD10 Gene Search Result


Gene Information
Gene Name SAMD10
Gene ID 140700
Gene Full Name sterile alpha motif domain containing 10
Gene Alias dJ591C20; C20orf136; dJ591C20.7
Transcripts ENSG00000130590
Virus HBV
Gene Type protein coding
HPA Location Info Nucleoplasm;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q9BYL1
HGNC ID HGNC:16129
VEGA ID OTTHUMG00000033011
String ID 9606.ENSP00000358902
PharmGKB ID PA25678
Target gene [SAMD10] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1002788 chr20 67 105 32 204 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of SAMD10 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
SAMD10 expression: Low -> High
Lollipop of SAMD10 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of SAMD10 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of SAMD10 expression and immune infiltrating cell level correlation result in HBV+ samples
SAMD10 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).