HBV Target gene Detail Information

> RTTN Gene Search Result

Gene Information

Gene Name	RTTN
Gene ID	25914
Gene Full Name	rotatin
Gene Alias	MSSP
Transcripts	ENSG00000176225
Virus	HBV
Gene Type	protein coding
HPA Location Info	Cytosol;Centrosome;
HPA Protein Class Info	Disease related genes, Predicted intracellular proteins
Uniport_ID	Q86VV8
HGNC ID	HGNC:18654
VEGA ID	OTTHUMG00000178694
OMIM ID	610436
String ID	9606.ENSP00000255674
PharmGKB ID	PA38622

Target gene [RTTN] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1016906	chr18		1		1	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE114783 (GEO)	Chronic HBV (CHB) infection	36	Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO)	Hepatocellular carcinoma	36	Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO)	Liver cirrhosis	36	Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA)	Liver hepatocellular carcinoma	424	Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783
HeatMap of cell type fractions in all samples	Lollipop of RTTN expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
RTTN expression: Low -> High
Lollipop of RTTN expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples	Lollipop of RTTN expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples


> Dataset: LIHC
HeatMap of cell type fractions in all samples	Lollipop of RTTN expression and immune infiltrating cell level correlation result in HBV+ samples
RTTN expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).