HIV Target gene Detail Information

> RRP12 Gene Search Result

Gene Information

Gene Name	RRP12
Gene ID	23223
Gene Full Name	ribosomal RNA processing 12 homolog
Gene Alias	KIAA0690
Transcripts	ENSG00000052749
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoli;Cytosol;Plasma membrane;Vesicles;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	Q5JTH9
HGNC ID	HGNC:29100
VEGA ID	OTTHUMG00000018855
OMIM ID	617723
String ID	9606.ENSP00000446184
PharmGKB ID	PA162402122

Target gene [RRP12] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4009353	chr10	11	1		12	View
4012856	chr10	4			4	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of RRP12 expression and immune infiltrating cell level correlation result in HIV+ samples
RRP12 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of RRP12 expression and immune infiltrating cell level correlation result in HIV+ samples
RRP12 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).