HIV Target gene Detail Information

> RPRD1B Gene Search Result

Gene Information

Gene Name	RPRD1B
Gene ID	58490
Gene Full Name	regulation of nuclear pre-mRNA domain containing 1B
Gene Alias	K-H; CREPT; NET60; C20orf77; Kub5-Hera; dJ1057B20.2
Transcripts	ENSG00000101413
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q9NQG5
HGNC ID	HGNC:16209
VEGA ID	OTTHUMG00000032434
OMIM ID	614694
String ID	9606.ENSP00000362532
PharmGKB ID	PA162402043

Target gene [RPRD1B] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4001874	chr20	116	9		125	View
4007879	chr20		15	2	17	View
4010009	chr20	6	4		10	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of RPRD1B expression and immune infiltrating cell level correlation result in HIV+ samples
RPRD1B expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of RPRD1B expression and immune infiltrating cell level correlation result in HIV+ samples
RPRD1B expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).