HIV Target gene Detail Information

> RPL28 Gene Search Result

Gene Information

Gene Name	RPL28
Gene ID	6158
Gene Full Name	ribosomal protein L28
Gene Alias	L28
Transcripts	ENSG00000108107
Virus	HIV
Gene Type	protein coding
HPA Location Info	Cytosol;Endoplasmic reticulum;
HPA Protein Class Info	Predicted intracellular proteins, Ribosomal proteins
Uniport_ID	P46779
HGNC ID	HGNC:10330
VEGA ID	OTTHUMG00000171991
OMIM ID	603638
String ID	9606.ENSP00000452909
PharmGKB ID	PA34710

Target gene [RPL28] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4003043	chr19	69	2		71	View
4012939	chr19	2	2		4	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of RPL28 expression and immune infiltrating cell level correlation result in HIV+ samples
RPL28 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).