HPV Target gene Detail Information

> RPL13A Gene Search Result

Gene Information

Gene Name	RPL13A
Gene ID	23521
Gene Full Name	ribosomal protein L13a
Gene Alias	L13A; TSTA1
Transcripts	ENSG00000142541
Virus	HPV
Gene Type	protein coding
HPA Location Info	Cytosol;Nucleoli;
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins, Ribosomal proteins
Uniport_ID	P40429
HGNC ID	HGNC:10304
VEGA ID	OTTHUMG00000134289
OMIM ID	619225
String ID	9606.ENSP00000375730
Drugbank ID	BE0003824
PharmGKB ID	PA38122

Target gene [RPL13A] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5300475	chr19	196	7		203	View
5300476	chr19	198	7		205	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE40774 (GEO)	Head and neck squamous cell carcinoma	134	Head and neck Squamous cell carcinomas GLOTTIC LARYNX (EBV-)(2), Head and neck Squamous cell carcinomas HYPOPHARYNX (EBV-)(9), Head and neck Squamous cell carcinomas ORAL CAVITY (EBV-)(23), Head and neck Squamous cell carcinomas ORAL CAVITY (EBV+)(2), Head and neck Squamous cell carcinomas OROPHARYNX (EBV-)(22), Head and neck Squamous cell carcinomas OROPHARYNX (EBV+)(54), Head and neck Squamous cell carcinomas OTHER (EBV+)(1), Head and neck Squamous cell carcinomas SUBGLOTTIC LARYNX (EBV-)(1), Head and neck Squamous cell carcinomas SUPRAGLOTTIC (EBV-)(19), Squamous cell carcinomas SUPRAGLOTTIC (EBV+)(1)
GSE138080 (GEO)	Cervical intraepithelial neoplasia	25	Normal (10), Cervical intraepithelial neoplasia (HPV+)(15)
HNSC (TCGA)	Head and Neck squamous cell carcinoma	566	Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE40774
HeatMap of cell type fractions in all samples	Lollipop of RPL13A expression and immune infiltrating cell level correlation result in HPV+ samples
RPL13A expression: Low -> High

> Dataset: GSE138080
HeatMap of cell type fractions in all samples	Lollipop of RPL13A expression and immune infiltrating cell level correlation result in HPV+ samples
RPL13A expression: Low -> High

> Dataset: HNSC
HeatMap of cell type fractions in all samples	Lollipop of RPL13A expression and immune infiltrating cell level correlation result in HPV+ samples
RPL13A expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).