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HBV Target gene Detail Information

> RPH3A Gene Search Result


Gene Information
Gene Name RPH3A
Gene ID 22895
Gene Full Name rabphilin 3A
Transcripts ENSG00000089169
Virus HBV
Gene Type protein coding
HPA Location Info
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q9Y2J0
HGNC ID HGNC:17056
VEGA ID OTTHUMG00000169713
OMIM ID 612159
String ID 9606.ENSP00000374036
PharmGKB ID PA134886118
Target gene [RPH3A] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1008127 chr12 5 13 4 22 View
1008134 chr12 5 13 4 22 View
1008143 chr12 5 13 4 22 View
1008146 chr12 5 13 4 22 View
1008151 chr12 5 13 4 22 View
1008153 chr12 5 13 4 22 View
1008165 chr12 5 13 4 22 View
1008169 chr12 5 13 4 22 View
1008170 chr12 5 13 4 22 View
1008177 chr12 5 13 4 22 View
1008179 chr12 5 13 4 22 View
1008182 chr12 5 13 4 22 View
1008184 chr12 5 13 4 22 View
1008187 chr12 5 13 4 22 View
1008190 chr12 5 13 4 22 View
1012489 chr12 6 6 View
1018367 chr12 0 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of RPH3A expression and immune infiltrating cell level correlation result in HBV+ samples
RPH3A expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).