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HTLV1 Target gene Detail Information

> RPGRIP1 Gene Search Result


Gene Information
Gene Name RPGRIP1
Gene ID 57096
Gene Full Name RPGR interacting protein 1
Gene Alias LCA6; RGI1; RGRIP; CORD13; RPGRIP; RPGRIP1d
Transcripts ENSG00000092200
Virus HTLV1
Gene Type protein coding
HPA Location Info
HPA Protein Class Info Disease related genes, Predicted intracellular proteins
Uniport_ID Q96KN7
HGNC ID HGNC:13436
VEGA ID OTTHUMG00000170758
OMIM ID 605446
String ID 9606.ENSP00000382895
PharmGKB ID PA34657
Target gene [RPGRIP1] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6006898 chr14 56 6 62 View
6011708 chr14 23 2 25 View
6015041 chr14 15 15 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE55851 (GEO) Adult T-cell leukemia 21 Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO) HTLV-1 associated myelopathy 39 Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO) HTLV-1 associated myelopathy 35 Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851

HeatMap of cell type fractions in all samples Lollipop of RPGRIP1 expression and immune infiltrating cell level correlation result in HTLV1+ samples
RPGRIP1 expression: Low -> High

> Dataset: GSE29312

HeatMap of cell type fractions in all samples Lollipop of RPGRIP1 expression and immune infiltrating cell level correlation result in HTLV1+ samples
RPGRIP1 expression: Low -> High

> Dataset: GSE29332

HeatMap of cell type fractions in all samples Lollipop of RPGRIP1 expression and immune infiltrating cell level correlation result in HTLV1+ samples
RPGRIP1 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).