HIV Target gene Detail Information

> RPAP2 Gene Search Result

Gene Information

Gene Name	RPAP2
Gene ID	79871
Gene Full Name	RNA polymerase II associated protein 2
Gene Alias	Rtr1; C1orf82
Transcripts	ENSG00000122484
Virus	HIV
Gene Type	protein coding
HPA Location Info	Cytosol;Nucleoli;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Enzymes, Predicted membrane proteins
Uniport_ID	Q8IXW5
HGNC ID	HGNC:25791
VEGA ID	OTTHUMG00000010288
OMIM ID	611476
String ID	9606.ENSP00000476948
PharmGKB ID	PA162401981

Target gene [RPAP2] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4001490	chr1	139	11	8	158	View
4009407	chr1	9	2		11	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of RPAP2 expression and immune infiltrating cell level correlation result in HIV+ samples
RPAP2 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of RPAP2 expression and immune infiltrating cell level correlation result in HIV+ samples
RPAP2 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).