HIV Target gene Detail Information

> RNF38 Gene Search Result

Gene Information

Gene Name	RNF38
Gene ID	152006
Gene Full Name	ring finger protein 38
Transcripts	ENSG00000137075
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Enzymes, Predicted intracellular proteins
Uniport_ID	Q9H0F5
HGNC ID	HGNC:18052
VEGA ID	OTTHUMG00000019905
OMIM ID	612488
String ID	9606.ENSP00000259605
PharmGKB ID	PA34438

Target gene [RNF38] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4004176	chr9	48			48	View
4010530	chr9	3	3	2	8	View
4011489	chr9	7			7	View
4015152	chr9		1		1	View
4015834	chr9		1		1	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of RNF38 expression and immune infiltrating cell level correlation result in HIV+ samples
RNF38 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of RNF38 expression and immune infiltrating cell level correlation result in HIV+ samples
RNF38 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).