HIV Target gene Detail Information

> RNF13 Gene Search Result

Gene Information

Gene Name	RNF13
Gene ID	11342
Gene Full Name	ring finger protein 13
Gene Alias	RZF
Transcripts	ENSG00000082996
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;Vesicles;Cytosol;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Enzymes, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	O43567
HGNC ID	HGNC:10057
VEGA ID	OTTHUMG00000150338
OMIM ID	609247
String ID	9606.ENSP00000341361
PharmGKB ID	PA34422

Target gene [RNF13] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000054	chr3	11	711	831	1553	View
4003515	chr3	49	11		60	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of RNF13 expression and immune infiltrating cell level correlation result in HIV+ samples
RNF13 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of RNF13 expression and immune infiltrating cell level correlation result in HIV+ samples
RNF13 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).