HIV Target gene Detail Information

> RIF1 Gene Search Result

Gene Information

Gene Name	RIF1
Gene ID	55183
Gene Full Name	replication timing regulatory factor 1
Transcripts	ENSG00000080345
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nuclear bodies;Nucleoplasm;Plasma membrane;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q5UIP0
HGNC ID	HGNC:23207
VEGA ID	OTTHUMG00000131886
OMIM ID	608952
String ID	9606.ENSP00000243326
PharmGKB ID	PA134933858

Target gene [RIF1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4001920	chr2	76	25	22	123	View
4006491	chr2	24			24	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of RIF1 expression and immune infiltrating cell level correlation result in HIV+ samples
RIF1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).