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HBV Target gene Detail Information

> RHBDF2 Gene Search Result


Gene Information
Gene Name RHBDF2
Gene ID 79651
Gene Full Name rhomboid 5 homolog 2
Gene Alias TEC; TOC; TOCG; RHBDL5; RHBDL6; iRhom2
Transcripts ENSG00000129667
Virus HBV
Gene Type protein coding
HPA Location Info
Membrane Info Predicted membrane proteins
HPA Protein Class Info Disease related genes, Enzymes, Potential drug targets, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q6PJF5
HGNC ID HGNC:20788
VEGA ID OTTHUMG00000180180
OMIM ID 614404
String ID 9606.ENSP00000322775
PharmGKB ID PA134980674
Target gene [RHBDF2] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1001743 chr17 388 65 51 504 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of RHBDF2 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
RHBDF2 expression: Low -> High
Lollipop of RHBDF2 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of RHBDF2 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of RHBDF2 expression and immune infiltrating cell level correlation result in HBV+ samples
RHBDF2 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).