HIV Target gene Detail Information

> RGPD5 Gene Search Result

Gene Information

Gene Name	RGPD5
Gene ID	84220
Gene Alias	BS63; RGP5; BS-63; HEL161
Transcripts	ENSG00000015568
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nuclear membrane;Vesicles;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q99666
HGNC ID	HGNC:32418
VEGA ID	OTTHUMG00000130985
OMIM ID	612708
String ID	9606.ENSP00000016946
PharmGKB ID	PA142671074

Target gene [RGPD5] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4016290	chr2				0	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of RGPD5 expression and immune infiltrating cell level correlation result in HIV+ samples
RGPD5 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).