HIV Target gene Detail Information

> RFT1 Gene Search Result

Gene Information

Gene Name	RFT1
Gene ID	91869
Gene Full Name	RFT1 homolog
Gene Alias	CDG1N
Transcripts	ENSG00000163933
Virus	HIV
Gene Type	protein coding
HPA Location Info	Vesicles;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Disease related genes, Potential drug targets, Predicted membrane proteins, Transporters
Uniport_ID	Q96AA3
HGNC ID	HGNC:30220
VEGA ID	OTTHUMG00000074035
OMIM ID	611908
String ID	9606.ENSP00000296292
PharmGKB ID	PA134960002

Target gene [RFT1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4007163	chr3	19	1		20	View
4011850	chr3	3	3		6	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of RFT1 expression and immune infiltrating cell level correlation result in HIV+ samples
RFT1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).