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HPV Target gene Detail Information

> RFPL1S Gene Search Result


Gene Information
Gene Name RFPL1S
Gene ID 10740
Gene Full Name RFPL1 antisense RNA 1
Gene Alias RFPL1AS; RFPL1-AS; RFPL1-AS1; NCRNA00006
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:9978
OMIM ID 605972
lncRNASNP2 ID NONHSAG033641.2
PharmGKB ID PA34347
Target gene [RFPL1S] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5403386 chr22 6 2 8 View
5403504 chr22 2 1 3 View
5404935 chr22 11 11 1 23 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE140662 (GEO) Condyloma Acuminatum 8 Condyloma acuminata (HPV+)(5), Skin(3)
GSE65858 (GEO) Head and neck squamous cell carcinoma 270 Head and neck squamous cell carcinoma (EBV+)(73), Head and neck squamous cell carcinoma (EBV-)(197)
GSE138080 (GEO) Cervical intraepithelial neoplasia 25 Normal (10), Cervical intraepithelial neoplasia (HPV+)(15)
GSE51993 (GEO) Cervical intraepithelial neoplasia 24 Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)
HNSC (TCGA) Head and Neck squamous cell carcinoma 566 Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE140662

HeatMap of cell type fractions in all samples Lollipop of RFPL1S expression and immune infiltrating cell level correlation result in HPV+ samples
RFPL1S expression: Low -> High

> Dataset: GSE65858

HeatMap of cell type fractions in all samples Lollipop of RFPL1S expression and immune infiltrating cell level correlation result in HPV+ samples
RFPL1S expression: Low -> High

> Dataset: GSE138080

HeatMap of cell type fractions in all samples Lollipop of RFPL1S expression and immune infiltrating cell level correlation result in HPV+ samples
RFPL1S expression: Low -> High

> Dataset: GSE51993

HeatMap of cell type fractions in all samples Lollipop of RFPL1S expression and immune infiltrating cell level correlation result in HPV+ samples
RFPL1S expression: Low -> High

> Dataset: HNSC

HeatMap of cell type fractions in all samples Lollipop of RFPL1S expression and immune infiltrating cell level correlation result in HPV+ samples
RFPL1S expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).