HTLV1 Target gene Detail Information

> RDH12 Gene Search Result

Gene Information

Gene Name	RDH12
Gene ID	145226
Gene Full Name	retinol dehydrogenase 12
Gene Alias	RP53; LCA13; SDR7C2
Transcripts	ENSG00000139988
Virus	HTLV1
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Disease related genes, Plasma proteins, Predicted intracellular proteins
Uniport_ID	Q96NR8
HGNC ID	HGNC:19977
VEGA ID	OTTHUMG00000170032
OMIM ID	608830
String ID	9606.ENSP00000449079
Drugbank ID	BE0000726
PharmGKB ID	PA134864793

Target gene [RDH12] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6022062	chr14	3		2	5	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of RDH12 expression and immune infiltrating cell level correlation result in HTLV1+ samples
RDH12 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of RDH12 expression and immune infiltrating cell level correlation result in HTLV1+ samples
RDH12 expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of RDH12 expression and immune infiltrating cell level correlation result in HTLV1+ samples
RDH12 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).