HTLV1 Target gene Detail Information

> RCBTB1 Gene Search Result

Gene Information

Gene Name	RCBTB1
Gene ID	55213
Gene Full Name	RCC1 and BTB domain containing protein 1
Gene Alias	GLP; CLLD7; CLLL7; RDEOA
Transcripts	ENSG00000136144
Virus	HTLV1
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Disease related genes, Predicted intracellular proteins
Uniport_ID	Q8NDN9
HGNC ID	HGNC:18243
VEGA ID	OTTHUMG00000016915
OMIM ID	607867
String ID	9606.ENSP00000367552
PharmGKB ID	PA134955699

Target gene [RCBTB1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6014678	chr13	16			16	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of RCBTB1 expression and immune infiltrating cell level correlation result in HTLV1+ samples
RCBTB1 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of RCBTB1 expression and immune infiltrating cell level correlation result in HTLV1+ samples
RCBTB1 expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of RCBTB1 expression and immune infiltrating cell level correlation result in HTLV1+ samples
RCBTB1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).