HIV Target gene Detail Information

> RC3H1 Gene Search Result

Gene Information

Gene Name	RC3H1
Gene ID	149041
Gene Full Name	ring finger and CCCH-type domains 1
Gene Alias	RNF198; ROQUIN
Transcripts	ENSG00000135870
Virus	HIV
Gene Type	protein coding
HPA Location Info	Cytosol;Golgi apparatus;Plasma membrane;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q5TC82
HGNC ID	HGNC:29434
VEGA ID	OTTHUMG00000037275
OMIM ID	609424
String ID	9606.ENSP00000356669
PharmGKB ID	PA142671090

Target gene [RC3H1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4006564	chr1	24			24	View
4012559	chr1	4	1		5	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of RC3H1 expression and immune infiltrating cell level correlation result in HIV+ samples
RC3H1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).