HBV Target gene Detail Information

> RBM6 Gene Search Result

Gene Information

Gene Name	RBM6
Gene ID	10180
Gene Full Name	RNA binding motif protein 6
Gene Alias	3G2; g16; DEF3; DEF-3; HLC-11; NY-LU-12
Transcripts	ENSG00000004534
Virus	HBV
Gene Type	protein coding
HPA Location Info	Nuclear speckles;Cytoplasmic bodies;
HPA Protein Class Info	Cancer-related genes, Plasma proteins, Predicted intracellular proteins
Gene Function	Suppressor gene
Uniport_ID	P78332
HGNC ID	HGNC:9903
VEGA ID	OTTHUMG00000156736
OMIM ID	606886
String ID	9606.ENSP00000266022
PharmGKB ID	PA34268

Target gene [RBM6] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1009327	chr3	16			16	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE114783 (GEO)	Chronic HBV (CHB) infection	36	Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO)	Hepatocellular carcinoma	36	Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO)	Liver cirrhosis	36	Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA)	Liver hepatocellular carcinoma	424	Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783
HeatMap of cell type fractions in all samples	Lollipop of RBM6 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
RBM6 expression: Low -> High
Lollipop of RBM6 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples	Lollipop of RBM6 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples


> Dataset: LIHC
HeatMap of cell type fractions in all samples	Lollipop of RBM6 expression and immune infiltrating cell level correlation result in HBV+ samples
RBM6 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).