HIV Target gene Detail Information

> RBM39 Gene Search Result

Gene Information

Gene Name	RBM39
Gene ID	9584
Gene Full Name	RNA binding motif protein 39
Gene Alias	HCC1; CAPER; RNPC2; FSAP59; CAPERalpha
Transcripts	ENSG00000131051
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nuclear speckles;Nucleoplasm;Centriolar satellite;Microtubules;
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins
Uniport_ID	Q14498
HGNC ID	HGNC:15923
VEGA ID	OTTHUMG00000032358
OMIM ID	604739
String ID	9606.ENSP00000253363
PharmGKB ID	PA34450

Target gene [RBM39] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4002862	chr20	71	6		77	View
4005711	chr20	4	19	7	30	View
4007410	chr20	4	12	3	19	View
4008823	chr20	7	7		14	View
4009058	chr20	2	8	3	13	View
4009411	chr20	10	1		11	View
4011845	chr20	3	3		6	View
4013806	chr20	3			3	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of RBM39 expression and immune infiltrating cell level correlation result in HIV+ samples
RBM39 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of RBM39 expression and immune infiltrating cell level correlation result in HIV+ samples
RBM39 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).