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HBV Target gene Detail Information

> RBM33 Gene Search Result


Gene Information
Gene Name RBM33
Gene ID 155435
Gene Full Name RNA binding motif protein 33
Gene Alias PRR8
Transcripts ENSG00000184863
Virus HBV
Gene Type protein coding
HPA Location Info Nucleoplasm;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q96EV2
HGNC ID HGNC:27223
VEGA ID OTTHUMG00000150260
String ID 9606.ENSP00000384160
PharmGKB ID PA142671093
Target gene [RBM33] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1010973 chr7 9 1 10 View
1011137 chr7 9 1 10 View
1012885 chr7 3 3 6 View
1012886 chr7 3 3 6 View
1013828 chr7 3 1 4 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of RBM33 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
RBM33 expression: Low -> High
Lollipop of RBM33 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of RBM33 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of RBM33 expression and immune infiltrating cell level correlation result in HBV+ samples
RBM33 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).