HIV Target gene Detail Information

> RBM17 Gene Search Result

Gene Information

Gene Name	RBM17
Gene ID	84991
Gene Full Name	RNA binding motif protein 17
Gene Alias	SPF45
Transcripts	ENSG00000134453
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins
Uniport_ID	Q96I25
HGNC ID	HGNC:16944
VEGA ID	OTTHUMG00000017618
OMIM ID	606935
String ID	9606.ENSP00000388638
PharmGKB ID	PA134860993

Target gene [RBM17] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4016139	chr10				0	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of RBM17 expression and immune infiltrating cell level correlation result in HIV+ samples
RBM17 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of RBM17 expression and immune infiltrating cell level correlation result in HIV+ samples
RBM17 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).