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HIV Target gene Detail Information

> RBM15B Gene Search Result


Gene Information
Gene Name RBM15B
Gene ID 29890
Gene Full Name RNA binding motif protein 15B
Gene Alias OTT3; HsOTT3; HUMAGCGB
Transcripts ENSG00000259956
Virus HIV
Gene Type protein coding
HPA Location Info Nucleoplasm;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q8NDT2
HGNC ID HGNC:24303
VEGA ID OTTHUMG00000156896
OMIM ID 612602
String ID 9606.ENSP00000454545
PharmGKB ID PA134870079
Target gene [RBM15B] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4003336 chr3 60 3 1 64 View
4003378 chr3 60 2 1 63 View
4003379 chr3 60 2 1 63 View
4003380 chr3 60 2 1 63 View
4003426 chr3 61 1 62 View
4003522 chr3 59 1 60 View
4003523 chr3 59 1 60 View
4003524 chr3 59 1 60 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO) HIV-infected disease 44 HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of RBM15B expression and immune infiltrating cell level correlation result in HIV+ samples
RBM15B expression: Low -> High

> Dataset: GSE50834

HeatMap of cell type fractions in all samples Lollipop of RBM15B expression and immune infiltrating cell level correlation result in HIV+ samples
RBM15B expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).