HIV Target gene Detail Information

> RBM10 Gene Search Result


Gene Information
Gene Name RBM10
Gene ID 8241
Gene Full Name RNA binding motif protein 10
Gene Alias S1-1; TARPS; GPATC9; ZRANB5; GPATCH9; DXS8237E
Transcripts ENSG00000182872
Virus HIV
Gene Type protein coding
HPA Location Info Nuclear speckles;
HPA Protein Class Info Cancer-related genes, Disease related genes, Predicted intracellular proteins
Uniport_ID P98175
HGNC ID HGNC:9896
VEGA ID OTTHUMG00000021432
OMIM ID 300080
String ID 9606.ENSP00000328848
PharmGKB ID PA34259
Target gene [RBM10] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4012027 chrX 5 5 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO) HIV-infected disease 44 HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of RBM10 expression and immune infiltrating cell level correlation result in HIV+ samples
RBM10 expression: Low -> High

> Dataset: GSE50834

HeatMap of cell type fractions in all samples Lollipop of RBM10 expression and immune infiltrating cell level correlation result in HIV+ samples
RBM10 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).