HIV Target gene Detail Information

> RBBP4 Gene Search Result

Gene Information

Gene Name	RBBP4
Gene ID	5928
Gene Full Name	RB binding protein 4, chromatin remodeling factor
Gene Alias	NURF55; RBAP48; lin-53
Transcripts	ENSG00000162521
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Cancer-related genes, Plasma proteins, Predicted intracellular proteins
Uniport_ID	Q09028
HGNC ID	HGNC:9887
VEGA ID	OTTHUMG00000007998
OMIM ID	602923
String ID	9606.ENSP00000362592
PharmGKB ID	PA34251

Target gene [RBBP4] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4004962	chr1	33	4		37	View
4005594	chr1	21	10		31	View
4006852	chr1	21	1		22	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of RBBP4 expression and immune infiltrating cell level correlation result in HIV+ samples
RBBP4 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of RBBP4 expression and immune infiltrating cell level correlation result in HIV+ samples
RBBP4 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).