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HBV Target gene Detail Information

> RAPGEF2 Gene Search Result


Gene Information
Gene Name RAPGEF2
Gene ID 9693
Gene Full Name Rap guanine nucleotide exchange factor 2
Gene Alias RAGEF; RA-GEF; NRAPGEP; PDZGEF1; Rap-GEP; CNrasGEF; PDZ-GEF1; RA-GEF-1; nRap GEP
Transcripts ENSG00000109756
Virus HBV
Gene Type protein coding
HPA Location Info Cytosol;Plasma membrane;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q9Y4G8
HGNC ID HGNC:16854
VEGA ID OTTHUMG00000161451
OMIM ID 609530
String ID 9606.ENSP00000264431
PharmGKB ID PA130413152
Target gene [RAPGEF2] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1003380 chr4 82 6 51 139 View
1003723 chr4 60 5 51 116 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of RAPGEF2 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
RAPGEF2 expression: Low -> High
Lollipop of RAPGEF2 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of RAPGEF2 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of RAPGEF2 expression and immune infiltrating cell level correlation result in HBV+ samples
RAPGEF2 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).