HIV Target gene Detail Information

> RAD21 Gene Search Result

Gene Information

Gene Name	RAD21
Gene ID	5885
Gene Full Name	RAD21 cohesin complex component
Gene Alias	MGS; HR21; MCD1; NXP1; SCC1; CDLS4; hHR21; HRAD21
Transcripts	ENSG00000164754
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Cancer-related genes, Disease related genes, Predicted intracellular proteins
Uniport_ID	O60216
HGNC ID	HGNC:9811
VEGA ID	OTTHUMG00000164959
OMIM ID	606462
String ID	9606.ENSP00000297338
PharmGKB ID	PA34170

Target gene [RAD21] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000721	chr8	38	249	16	303	View
4003932	chr8	43	9		52	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of RAD21 expression and immune infiltrating cell level correlation result in HIV+ samples
RAD21 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of RAD21 expression and immune infiltrating cell level correlation result in HIV+ samples
RAD21 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).