HIV Target gene Detail Information

> RAB3D Gene Search Result

Gene Information

Gene Name	RAB3D
Gene ID	9545
Gene Full Name	RAB3D, member RAS oncogene family
Gene Alias	GOV; D2-2; RAB16; RAD3D
Transcripts	ENSG00000105514
Virus	HIV
Gene Type	protein coding
HPA Location Info	Vesicles;
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins
Uniport_ID	O95716
HGNC ID	HGNC:9779
VEGA ID	OTTHUMG00000180835
OMIM ID	604350
String ID	9606.ENSP00000222120
PharmGKB ID	PA34134

Target gene [RAB3D] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4001861	chr19	13	49	64	126	View
4013385	chr19	3			3	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of RAB3D expression and immune infiltrating cell level correlation result in HIV+ samples
RAB3D expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).