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HTLV1 Target gene Detail Information

> RAB31 Gene Search Result


Gene Information
Gene Name RAB31
Gene ID 11031
Gene Full Name RAB31, member RAS oncogene family
Gene Alias Rab22B
Transcripts ENSG00000168461
Virus HTLV1
Gene Type protein coding
HPA Location Info
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q13636
HGNC ID HGNC:9771
VEGA ID OTTHUMG00000178513
OMIM ID 605694
String ID 9606.ENSP00000461945
PharmGKB ID PA34122
Target gene [RAB31] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6011468 chr18 26 26 View
6016958 chr18 9 2 11 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE55851 (GEO) Adult T-cell leukemia 21 Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO) HTLV-1 associated myelopathy 39 Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO) HTLV-1 associated myelopathy 35 Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851

HeatMap of cell type fractions in all samples Lollipop of RAB31 expression and immune infiltrating cell level correlation result in HTLV1+ samples
RAB31 expression: Low -> High

> Dataset: GSE29312

HeatMap of cell type fractions in all samples Lollipop of RAB31 expression and immune infiltrating cell level correlation result in HTLV1+ samples
RAB31 expression: Low -> High

> Dataset: GSE29332

HeatMap of cell type fractions in all samples Lollipop of RAB31 expression and immune infiltrating cell level correlation result in HTLV1+ samples
RAB31 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).