HIV Target gene Detail Information

> RAB28 Gene Search Result

Gene Information

Gene Name	RAB28
Gene ID	9364
Gene Full Name	RAB28, member RAS oncogene family
Gene Alias	CORD18
Transcripts	ENSG00000157869
Virus	HIV
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Disease related genes, Predicted intracellular proteins
Uniport_ID	P51157
HGNC ID	HGNC:9768
VEGA ID	OTTHUMG00000090543
OMIM ID	612994
String ID	9606.ENSP00000328551
PharmGKB ID	PA34119

Target gene [RAB28] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000289	chr4	461	37	87	585	View
4009696	chr4	9	2		11	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of RAB28 expression and immune infiltrating cell level correlation result in HIV+ samples
RAB28 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of RAB28 expression and immune infiltrating cell level correlation result in HIV+ samples
RAB28 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).