HIV Target gene Detail Information

> RAB11FIP3 Gene Search Result

Gene Information

Gene Name	RAB11FIP3
Gene ID	9727
Gene Full Name	RAB11 family interacting protein 3
Gene Alias	CART1; Rab11-FIP3
Transcripts	ENSG00000275338
Virus	HIV
Gene Type	protein coding
HPA Location Info	Centriolar satellite;Vesicles;Cytokinetic bridge;Mitochondria;Nucleoplasm;
HPA Protein Class Info	Cancer-related genes, Predicted intracellular proteins
Uniport_ID	O75154
HGNC ID	HGNC:17224
VEGA ID	OTTHUMG00000190833
OMIM ID	608738
String ID	9606.ENSP00000262305
PharmGKB ID	PA134950896

Target gene [RAB11FIP3] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4003806	chr16	47	6	1	54	View
4005467	chr16	3	28	1	32	View
4005557	chr16	30	1		31	View
4006105	chr16	27			27	View
4009140	chr16	12			12	View
4010791	chr16	7	1		8	View
4012583	chr16	5			5	View
4013791	chr16	2	1		3	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of RAB11FIP3 expression and immune infiltrating cell level correlation result in HIV+ samples
RAB11FIP3 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of RAB11FIP3 expression and immune infiltrating cell level correlation result in HIV+ samples
RAB11FIP3 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).