HBV Target gene Detail Information

> PVT1 Gene Search Result

Gene Information

Gene Name	PVT1
Gene ID	5820
Gene Alias	LINC00079; MIR1204HG; NCRNA00079; onco-lncRNA-100
Transcripts	ENSG00000249859
Virus	HBV
Gene Type	ncRNA
HPA Location Info
Gene Function	Oncogene
HGNC ID	HGNC:9709
VEGA ID	OTTHUMG00000164871
OMIM ID	165140
lncRNASNP2 ID	NONHSAG051258.2
PharmGKB ID	PA34053

Target gene [PVT1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1005828	chr8	31	14	2	47	View
1006113	chr8	28	13	2	43	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
LIHC (TCGA)	Liver hepatocellular carcinoma	424	Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC
HeatMap of cell type fractions in all samples	Lollipop of PVT1 expression and immune infiltrating cell level correlation result in HBV+ samples
PVT1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).