HIV Target gene Detail Information

> PTPRF Gene Search Result

Gene Information

Gene Name	PTPRF
Gene ID	5792
Gene Full Name	protein tyrosine phosphatase, receptor type F
Gene Alias	LAR; BNAH2
Transcripts	ENSG00000142949
Virus	HIV
Gene Type	protein coding
HPA Location Info	Golgi apparatus;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Disease related genes, Enzymes, Plasma proteins, Potential drug targets, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	P10586
HGNC ID	HGNC:9670
VEGA ID	OTTHUMG00000007501
OMIM ID	179590
String ID	9606.ENSP00000353030
PharmGKB ID	PA34015

Target gene [PTPRF] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4006293	chr1	21	5		26	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of PTPRF expression and immune infiltrating cell level correlation result in HIV+ samples
PTPRF expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).