HIV Target gene Detail Information

> PTPN4 Gene Search Result

Gene Information

Gene Name	PTPN4
Gene ID	5775
Gene Full Name	protein tyrosine phosphatase, non-receptor type 4
Gene Alias	MEG; PTPMEG; PTPMEG1
Transcripts	ENSG00000088179
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;Cytosol;Plasma membrane;
HPA Protein Class Info	Enzymes, Plasma proteins, Predicted intracellular proteins
Uniport_ID	P29074
HGNC ID	HGNC:9656
VEGA ID	OTTHUMG00000131436
OMIM ID	176878
String ID	9606.ENSP00000263708
Drugbank ID	BE0000980
PharmGKB ID	PA34000

Target gene [PTPN4] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4001763	chr2	98	21	15	134	View
4015093	chr2	1			1	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of PTPN4 expression and immune infiltrating cell level correlation result in HIV+ samples
PTPN4 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of PTPN4 expression and immune infiltrating cell level correlation result in HIV+ samples
PTPN4 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).