HIV Target gene Detail Information

> PRPF40A Gene Search Result

Gene Information

Gene Name	PRPF40A
Gene ID	55660
Gene Full Name	pre-mRNA processing factor 40 homolog A
Gene Alias	HYPA; FBP11; FLAF1; FNBP3; HIP10; Prp40; FBP-11; HIP-10; NY-REN-6
Transcripts	ENSG00000196504
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nuclear speckles;
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins
Uniport_ID	O75400
HGNC ID	HGNC:16463
VEGA ID	OTTHUMG00000154031
OMIM ID	612941
String ID	9606.ENSP00000386458
PharmGKB ID	PA28195

Target gene [PRPF40A] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4006751	chr2	6	15	2	23	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of PRPF40A expression and immune infiltrating cell level correlation result in HIV+ samples
PRPF40A expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of PRPF40A expression and immune infiltrating cell level correlation result in HIV+ samples
PRPF40A expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).