HTLV1 Target gene Detail Information

> PRG4 Gene Search Result

Gene Information

Gene Name	PRG4
Gene ID	10216
Gene Full Name	proteoglycan 4
Gene Alias	MSF; SZP; CACP; HAPO; JCAP
Transcripts	ENSG00000116690
Virus	HTLV1
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Disease related genes, Plasma proteins, Predicted secreted proteins
Uniport_ID	Q92954
HGNC ID	HGNC:9364
VEGA ID	OTTHUMG00000035574
OMIM ID	604283
String ID	9606.ENSP00000399679
PharmGKB ID	PA33736

Target gene [PRG4] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6016169	chr1	3	10		13	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of PRG4 expression and immune infiltrating cell level correlation result in HTLV1+ samples
PRG4 expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of PRG4 expression and immune infiltrating cell level correlation result in HTLV1+ samples
PRG4 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).